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Publish, Close, Save as Template

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To publish or close a run, you must have the Assay Publisher role.

The final step of the run is to close or publish the data, as defined in the run template.

From the Run Template

Some information in the run template limits the options for closing or publishing a run:

  • If the designer chose to close the run, you can only close it.
  • If the designer chose to publish the run, you can close or publish it according to the run template configuration.

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When closed or published, the run can be reopened for further modifications.

Close a Run

When the run is locked, you can close or publish it:

  • From the Run Details page, click the Close Run button.

Close Run from Run Details

  • From the Sample Analysis page, click the Next button, then Close.

Close Run from Sample Analysis

Your run is now closed.

Publication

If the designer selected a publisher, you can access the publication pages from:

  • The Sample Analysis page: click the Next button, then Publish.
  • The Run Details page: click the Publish Run button.

In both cases, you will be redirected to the Publisher pages.

Select Publisher

The selection of the publisher is skipped in Execution Mode, as the publisher is already selected in the run template.

You can access this page using the breadcrumb bar and go back to the Select Publisher page.

Publication Page

The publication page depends on the publisher selected in the run template (for example, Warehouse).

Using Warehouse

In the Warehouse publisher page, the selected protocols and parameters will be automatically displayed and filled in.

Warehouse publish page

  • Click the Publish button to publish your run into Warehouse using the selected protocol and parameters.

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You can unpublish a run published in Warehouse. Go back to the Publishing page, and click the Unpublish button. The run will be unpublished, and the data will be removed from Warehouse.

Other Actions

Reopen a Run

If the run has been closed you can reopen it, for example, to update some of the data in the run.

To reopen your run, go to the Run Details page, and click the Reopen Run button.

Reopen Run